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Searching for TAAGGCACCATCGAGGGTCGC in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT2G34020

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GAGACCCTCGATGGTGCCTTT

Hybridization energy: -45.36kcal/mol (92.63 %)

Target gene 5'->3'/30-50	 GAGACCCTCGATGGTGCCTTT
amiRNA (rev. complement)   	 GCGACCCTCGATGGTGCCTTA
	 * ******************

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AT2G34020.1 | Symbols:  | calcium ion binding | chr2:14378264-14380934 REVERSE
Target region: GCGACCCACGAGGGTGCTTTA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -35.48kcal/mol (72.45 %)

Target gene 5'->3'/597-617	 GCGACCCACGAGGGTGCTTTA
amiRNA (rev. complement)   	 GCGACCCTCGATGGTGCCTTA
	 ******* *** ***** ***

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Target gene 5'->3'/30-50	GAGACCCTCGATGGTGCCTTT
amiRNA (rev. complement)	GCGACCCTCGATGGTGCCTTA
	* ******************

Target gene 5'->3'/597-617	GCGACCCACGAGGGTGCTTTA
amiRNA (rev. complement)	GCGACCCTCGATGGTGCCTTA
	***** * *** *