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Searching for TATCCCAGGATTCTGACCCAT in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT4G19512

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: ATGGCTCAGAATCCTGGGATG

Hybridization energy: -38.55kcal/mol (83.60 %)

Target gene 5'->3'/835-855	 ATGGCTCAGAATCCTGGGATG
amiRNA (rev. complement)   	 ATGGGTCAGAATCCTGGGATA
	 **** ***************

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AT4G19512.1 | Symbols:  | unknown protein | chr4:10639498-10639713 REVERSE
Target region: ATGGGTCAAAATCAAGGGATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -30.55kcal/mol (66.25 %)

Target gene 5'->3'/82-102	 ATGGGTCAAAATCAAGGGATA
amiRNA (rev. complement)   	 ATGGGTCAGAATCCTGGGATA
	 ******** ****  ******

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Target gene 5'->3'/835-855	ATGGCTCAGAATCCTGGGATG
amiRNA (rev. complement)	ATGGGTCAGAATCCTGGGATA
	** *************

Target gene 5'->3'/82-102	ATGGGTCAAAATCAAGGGATA
amiRNA (rev. complement)	ATGGGTCAGAATCCTGGGATA
	****** ****