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Searching for TATCGAGGGTCTCGCCTCCTC in database TAIR8_cdna_20080412


4 search results.

AT4G27890
AT2G27280
AT2G18193
AT5G14720



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GAGGAGGCGAGACCCTCGATG

Hybridization energy: -49.44kcal/mol (99.38 %)

Target gene 5'->3'/22-42 GAGGAGGCGAGACCCTCGATG
amiRNA (rev. complement) GAGGAGGCGAGACCCTCGATA
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AT2G27280.1 | Symbols:  | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27285.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79937.1) | chr2:11680904-11682691 REVERSE
Target region: GAGGAGGCGAGACTCTCGACG

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -44.22kcal/mol (88.88 %)

Target gene 5'->3'/4-24 GAGGAGGCGAGACTCTCGACG
amiRNA (rev. complement) GAGGAGGCGAGACCCTCGATA
************* *****
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AT2G18193.1 | Symbols:  | AAA-type ATPase family protein | chr2:7924587-7926359 REVERSE
Target region: GAGGCGAAGAGATCCTCGATA

Hybridization energy: -35.28kcal/mol (70.91 %)

Target gene 5'->3'/422-442 GAGGCGAAGAGATCCTCGATA
amiRNA (rev. complement) GAGGAGGCGAGACCCTCGATA
**** * **** ********
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AT5G14720.1 | Symbols:  | protein kinase family protein | chr5:4747863-4753595 REVERSE
Target region: GAGGAGGAGAGAAACTCGATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -34.70kcal/mol (69.75 %)

Target gene 5'->3'/26-46 GAGGAGGAGAGAAACTCGATA
amiRNA (rev. complement) GAGGAGGCGAGACCCTCGATA
******* **** *******
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