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Searching for TATCGAGGGTCTCTCTTCCTC in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT5G14720
AT4G32140



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GAGGAGGCGAGACCCTCGATG

Hybridization energy: -40.27kcal/mol (87.93 %)

Target gene 5'->3'/22-42 GAGGAGGCGAGACCCTCGATG
amiRNA (rev. complement) GAGGAAGAGAGACCCTCGATA
***** * ************
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AT5G14720.1 | Symbols:  | protein kinase family protein | chr5:4747863-4753595 REVERSE
Target region: GAGGAGGAGAGAAACTCGATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -36.50kcal/mol (79.69 %)

Target gene 5'->3'/26-46 GAGGAGGAGAGAAACTCGATA
amiRNA (rev. complement) GAGGAAGAGAGACCCTCGATA
***** ****** *******
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AT4G32140.1 | Symbols:  | similar to membrane protein [Arabidopsis thaliana] (TAIR:AT3G07080.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72310.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) | chr4:15522890-15525454 REVERSE
Target region: GAAGATGAGAGACCCTTGATC

Hybridization energy: -33.32kcal/mol (72.75 %)

Target gene 5'->3'/602-622 GAAGATGAGAGACCCTTGATC
amiRNA (rev. complement) GAGGAAGAGAGACCCTCGATA
** ** ********** ***
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