Target Search

Search:	Example: ath-miR156a
Genome:	Help
Mismatches:	Help

microRNA Filter

Advanced Search Options

Results

Searching for TATGGACTTAACAATCCCCTT in database TAIR8_cdna_20080412

2 search results.

AT5G07720
AT4G27890

Alignments

AT5G07720.1 | Symbols:  | galactosyl transferase GMA12/MNN10 family protein | chr5:2455635-2457317 FORWARD
Target region: CAGGGGATTGTTAAGTCCTAA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -37.31kcal/mol (91.24 %)

Target gene 5'->3'/1377-1397	 CAGGGGATTGTTAAGTCCTAA
amiRNA (rev. complement)   	 AAGGGGATTGTTAAGTCCATA
	  *****************  *

top

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AAGGAGAGTGTTAAGTCCATG

Hybridization energy: -28.84kcal/mol (70.53 %)

Target gene 5'->3'/220-240	 AAGGAGAGTGTTAAGTCCATG
amiRNA (rev. complement)   	 AAGGGGATTGTTAAGTCCATA
	 **** ** ************

top

Target gene 5'->3'/1377-1397	CAGGGGATTGTTAAGTCCTAA
amiRNA (rev. complement)	AAGGGGATTGTTAAGTCCATA
	***************** *

Target gene 5'->3'/220-240	AAGGAGAGTGTTAAGTCCATG
amiRNA (rev. complement)	AAGGGGATTGTTAAGTCCATA
	** ************