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Searching for TATGGACTTAACACCCTCCTT in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT5G49850
AT2G11850



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AAGGAGAGTGTTAAGTCCATG

Hybridization energy: -35.71kcal/mol (82.40 %)

Target gene 5'->3'/220-240 AAGGAGAGTGTTAAGTCCATG
amiRNA (rev. complement) AAGGAGGGTGTTAAGTCCATA
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AT5G49850.1 | Symbols:  | jacalin lectin family protein | chr5:20277134-20279811 REVERSE
Target region: AAGGATGGTATTAAGTTCATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -26.37kcal/mol (60.84 %)

Target gene 5'->3'/399-419 AAGGATGGTATTAAGTTCATA
amiRNA (rev. complement) AAGGAGGGTGTTAAGTCCATA
***** *** ****** ****
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AT2G11850.1 | Symbols:  | transposable element gene | chr2:4793779-4794625 REVERSE
Target region: AATGAGGATGTTAACTCCATA

Possible candidate. Low binding affinity: Only 54.59% of optimal dG

Hybridization energy: -23.66kcal/mol (54.59 %)

Target gene 5'->3'/56-76 AATGAGGATGTTAACTCCATA
amiRNA (rev. complement) AAGGAGGGTGTTAAGTCCATA
** **** ****** ******
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