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Searching for
TATGGACTTAACACCCTCCTT in database TAIR8_cdna_20080412
3 search results.
AT4G27890
AT5G49850
AT2G11850
AlignmentsAT4G27890.1 | Symbols: | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AAGGAGAGTGTTAAGTCCATG
Hybridization energy: -35.71kcal/mol (82.40 %)
Target gene 5'->3'/220-240 | AAGGAGAGTGTTAAGTCCATG |
amiRNA (rev. complement) | AAGGAGGGTGTTAAGTCCATA |
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topAT5G49850.1 | Symbols: | jacalin lectin family protein | chr5:20277134-20279811 REVERSE
Target region: AAGGATGGTATTAAGTTCATA
Possible candidate. More than one mismatch at positions 2-12
Hybridization energy: -26.37kcal/mol (60.84 %)
Target gene 5'->3'/399-419 | AAGGATGGTATTAAGTTCATA |
amiRNA (rev. complement) | AAGGAGGGTGTTAAGTCCATA |
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topAT2G11850.1 | Symbols: | transposable element gene | chr2:4793779-4794625 REVERSE
Target region: AATGAGGATGTTAACTCCATA
Possible candidate. Low binding affinity: Only 54.59% of optimal dG
Hybridization energy: -23.66kcal/mol (54.59 %)
Target gene 5'->3'/56-76 | AATGAGGATGTTAACTCCATA |
amiRNA (rev. complement) | AAGGAGGGTGTTAAGTCCATA |
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