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Searching for TATGGACTTAACACTCTCCTT in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT5G19930

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AAGGAGAGTGTTAAGTCCATG

Hybridization energy: -40.85kcal/mol (99.25 %)

Target gene 5'->3'/220-240	 AAGGAGAGTGTTAAGTCCATG
amiRNA (rev. complement)   	 AAGGAGAGTGTTAAGTCCATA
	 ********************

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AT5G19930.1 | Symbols:  | integral membrane family protein | chr5:6737580-6739350 REVERSE
Target region: AATGAGAGTTTTAAGTTCATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -25.74kcal/mol (62.54 %)

Target gene 5'->3'/1059-1079	 AATGAGAGTTTTAAGTTCATA
amiRNA (rev. complement)   	 AAGGAGAGTGTTAAGTCCATA
	 ** ****** ****** ****

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Target gene 5'->3'/220-240	AAGGAGAGTGTTAAGTCCATG
amiRNA (rev. complement)	AAGGAGAGTGTTAAGTCCATA
	********************

Target gene 5'->3'/1059-1079	AATGAGAGTTTTAAGTTCATA
amiRNA (rev. complement)	AAGGAGAGTGTTAAGTCCATA
	** ** **