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Searching for TATGGACTTAACACTCTGCTT in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT1G64040
AT1G50830



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AAGGAGAGTGTTAAGTCCATG

Hybridization energy: -36.19kcal/mol (88.40 %)

Target gene 5'->3'/220-240 AAGGAGAGTGTTAAGTCCATG
amiRNA (rev. complement) AAGCAGAGTGTTAAGTCCATA
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AT1G64040.1 | Symbols: TOPP3 | TOPP3 (Type one serine/threonine protein phosphatase 3); protein serine/threonine phosphatase | chr1:23761946-23764221 REVERSE
Target region: AAGCAGAGTGTAGAGACCATA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -28.57kcal/mol (69.79 %)

Target gene 5'->3'/567-587 AAGCAGAGTGTAGAGACCATA
amiRNA (rev. complement) AAGCAGAGTGTTAAGTCCATA
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AT1G50830.1 | Symbols:  | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51538.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18510.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68396.1); contains InterPro domain Protein of unknown function DUF1723 (InterPro:IPR013541) | chr1:18838939-18841610 REVERSE
Target region: AAGCAGAGTTTTTGGTCCATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -28.21kcal/mol (68.91 %)

Target gene 5'->3'/2152-2172 AAGCAGAGTTTTTGGTCCATA
amiRNA (rev. complement) AAGCAGAGTGTTAAGTCCATA
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