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Searching for TATGGACTTAACAGTCTCCTG in database TAIR8_cdna_20080412


5 search results.

AT4G27890
AT4G21540
AT4G21540
AT4G21540
AT1G17450



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AAGGAGAGTGTTAAGTCCATG

Hybridization energy: -37.17kcal/mol (89.91 %)

Target gene 5'->3'/220-240 AAGGAGAGTGTTAAGTCCATG
amiRNA (rev. complement) CAGGAGACTGTTAAGTCCATA
****** ************
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AT4G21540.1 | Symbols:  | D-erythro-sphingosine kinase/ diacylglycerol kinase | chr4:11454787-11462618 FORWARD
Target region: AAGGAAATTGTTAGGTCCATG

Hybridization energy: -31.09kcal/mol (75.21 %)

Target gene 5'->3'/2860-2880 AAGGAAATTGTTAGGTCCATG
amiRNA (rev. complement) CAGGAGACTGTTAAGTCCATA
**** * ***** ******
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AT4G21540.3 | Symbols:  | diacylglycerol kinase | chr4:11459565-11462582 FORWARD
Target region: AAGGAAATTGTTAGGTCCATG

Hybridization energy: -31.09kcal/mol (75.21 %)

Target gene 5'->3'/549-569 AAGGAAATTGTTAGGTCCATG
amiRNA (rev. complement) CAGGAGACTGTTAAGTCCATA
**** * ***** ******
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AT4G21540.2 | Symbols:  | diacylglycerol kinase | chr4:11459572-11462618 FORWARD
Target region: AAGGAAATTGTTAGGTCCATG

Hybridization energy: -31.09kcal/mol (75.21 %)

Target gene 5'->3'/542-562 AAGGAAATTGTTAGGTCCATG
amiRNA (rev. complement) CAGGAGACTGTTAAGTCCATA
**** * ***** ******
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AT1G17450.1 | Symbols:  | ATP phosphoribosyltransferase -related | chr1:5988636-5995112 REVERSE
Target region: CAGGAAACTGTTGAGTCAATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -27.52kcal/mol (66.57 %)

Target gene 5'->3'/2066-2086 CAGGAAACTGTTGAGTCAATA
amiRNA (rev. complement) CAGGAGACTGTTAAGTCCATA
***** ****** **** ***
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