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Searching for TATGGGATCAGTCCCCGTCAA in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT4G17140

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: TTGATGGCGACTGATCCCATG

Hybridization energy: -38.17kcal/mol (79.44 %)

Target gene 5'->3'/307-327	 TTGATGGCGACTGATCCCATG
amiRNA (rev. complement)   	 TTGACGGGGACTGATCCCATA
	 **** ** ************

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AT4G17140.1 | Symbols:  | pleckstrin homology (PH) domain-containing protein | chr4:9613342-9636884 REVERSE
Target region: TTGACGGGTTCTGCTCCCATA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -34.09kcal/mol (70.95 %)

Target gene 5'->3'/3016-3036	 TTGACGGGTTCTGCTCCCATA
amiRNA (rev. complement)   	 TTGACGGGGACTGATCCCATA
	 ********  *** *******

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Target gene 5'->3'/307-327	TTGATGGCGACTGATCCCATG
amiRNA (rev. complement)	TTGACGGGGACTGATCCCATA
	** ************

Target gene 5'->3'/3016-3036	TTGACGGGTTCTGCTCCCATA
amiRNA (rev. complement)	TTGACGGGGACTGATCCCATA
	****** * *******