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Searching for TCAGACCTTGATTTAGCGCCT in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT1G20693

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AGGCACTAAATCAAGGTCTGT

Hybridization energy: -37.48kcal/mol (83.98 %)

Target gene 5'->3'/459-479	 AGGCACTAAATCAAGGTCTGT
amiRNA (rev. complement)   	 AGGCGCTAAATCAAGGTCTGA
	 **** ***************

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AT1G20693.1 | Symbols: HMG BETA 1, NFD2, NFD02, HMGB2 | HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor | chr1:7176765-7178810 FORWARD
Target region: AGGAGCTAAATCAAAGACTGA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -24.09kcal/mol (53.98 %)

Target gene 5'->3'/192-212	 AGGAGCTAAATCAAAGACTGA
amiRNA (rev. complement)   	 AGGCGCTAAATCAAGGTCTGA
	 *** ********** * ****

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Target gene 5'->3'/459-479	AGGCACTAAATCAAGGTCTGT
amiRNA (rev. complement)	AGGCGCTAAATCAAGGTCTGA
	** *************

Target gene 5'->3'/192-212	AGGAGCTAAATCAAAGACTGA
amiRNA (rev. complement)	AGGCGCTAAATCAAGGTCTGA
	* ******** * ****