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Searching for TCATCGAGGGTCTCGCCTCCT in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT2G27280

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AGGAGGCGAGACCCTCGATGG

Hybridization energy: -51.41kcal/mol (98.85 %)

Target gene 5'->3'/23-43	 AGGAGGCGAGACCCTCGATGG
amiRNA (rev. complement)   	 AGGAGGCGAGACCCTCGATGA
	 ********************

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AT2G27280.1 | Symbols:  | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27285.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79937.1) | chr2:11680904-11682691 REVERSE
Target region: AGGAGGCGAGACTCTCGACGT

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -42.74kcal/mol (82.18 %)

Target gene 5'->3'/5-25	 AGGAGGCGAGACTCTCGACGT
amiRNA (rev. complement)   	 AGGAGGCGAGACCCTCGATGA
	 ************ ***** *

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Target gene 5'->3'/23-43	AGGAGGCGAGACCCTCGATGG
amiRNA (rev. complement)	AGGAGGCGAGACCCTCGATGA
	********************

Target gene 5'->3'/5-25	AGGAGGCGAGACTCTCGACGT
amiRNA (rev. complement)	AGGAGGCGAGACCCTCGATGA
	********** *** *