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Searching for TCATCGAGGGTCTTGCCCCCT in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT1G20780

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AGGAGGCGAGACCCTCGATGG

Hybridization energy: -44.04kcal/mol (84.37 %)

Target gene 5'->3'/23-43	 AGGAGGCGAGACCCTCGATGG
amiRNA (rev. complement)   	 AGGGGGCAAGACCCTCGATGA
	 *** *** ************

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AT1G20780.1 | Symbols:  | armadillo/beta-catenin repeat protein-related / U-box domain-containing protein | chr1:7217117-7220773 FORWARD
Target region: AGGGGTCAAGATACTCGATGA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -34.92kcal/mol (66.90 %)

Target gene 5'->3'/2420-2440	 AGGGGTCAAGATACTCGATGA
amiRNA (rev. complement)   	 AGGGGGCAAGACCCTCGATGA
	 ***** *****  ********

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Target gene 5'->3'/23-43	AGGAGGCGAGACCCTCGATGG
amiRNA (rev. complement)	AGGGGGCAAGACCCTCGATGA
	* * ************

Target gene 5'->3'/2420-2440	AGGGGTCAAGATACTCGATGA
amiRNA (rev. complement)	AGGGGGCAAGACCCTCGATGA
	*** * ******