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Searching for TCCTTGATTTAGTGCCTTCTG in database TAIR8_cdna_20080412


5 search results.

AT4G27890
AT1G78880
AT1G78882
AT3G57140
AT3G57140



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: CGGAAGGCACTAAATCAAGGT

Hybridization energy: -37.79kcal/mol (92.69 %)

Target gene 5'->3'/455-475 CGGAAGGCACTAAATCAAGGT
amiRNA (rev. complement) CAGAAGGCACTAAATCAAGGA
* ******************
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AT1G78880.1 | Symbols:  | balbiani ring 1-related / BR1-related | chr1:29657526-29660842 REVERSE
Target region: CTGATGGGACTAAGTCAAGGA

Hybridization energy: -30.81kcal/mol (75.57 %)

Target gene 5'->3'/571-591 CTGATGGGACTAAGTCAAGGA
amiRNA (rev. complement) CAGAAGGCACTAAATCAAGGA
* ** ** ***** *******
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AT1G78882.1 | Symbols: CPuORF56 | CPuORF56 (Conserved peptide upstream open reading frame 56) | chr1:29657526-29660842 REVERSE
Target region: CTGATGGGACTAAGTCAAGGA

Hybridization energy: -30.81kcal/mol (75.57 %)

Target gene 5'->3'/571-591 CTGATGGGACTAAGTCAAGGA
amiRNA (rev. complement) CAGAAGGCACTAAATCAAGGA
* ** ** ***** *******
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AT3G57140.1 | Symbols: SDP1-LIKE | SDP1-LIKE (SDP1-LIKE); GTP binding | chr3:21161401-21164486 REVERSE
Target region: CAAAAGGCAGCAAATCAAGGA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -26.85kcal/mol (65.86 %)

Target gene 5'->3'/1714-1734 CAAAAGGCAGCAAATCAAGGA
amiRNA (rev. complement) CAGAAGGCACTAAATCAAGGA
** ****** **********
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AT3G57140.2 | Symbols: SDP1-LIKE | SDP1-LIKE (SDP1-LIKE); GTP binding | chr3:21161401-21164575 REVERSE
Target region: CAAAAGGCAGCAAATCAAGGA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -26.85kcal/mol (65.86 %)

Target gene 5'->3'/1884-1904 CAAAAGGCAGCAAATCAAGGA
amiRNA (rev. complement) CAGAAGGCACTAAATCAAGGA
** ****** **********
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