Target Search

Search:	Example: ath-miR156a
Genome:	Help
Mismatches:	Help

microRNA Filter

Advanced Search Options

Results

Searching for TGATCAGTCGCCAACAAGCTG in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT1G47380

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GAGCTTGATGGCGACTGATCC

Hybridization energy: -39.77kcal/mol (88.61 %)

Target gene 5'->3'/303-323	 GAGCTTGATGGCGACTGATCC
amiRNA (rev. complement)   	 CAGCTTGTTGGCGACTGATCA
	  ****** ************

top

AT1G47380.1 | Symbols:  | protein phosphatase 2C-related / PP2C-related | chr1:17374977-17378515 REVERSE
Target region: CAGCTGGTGGTCGACTGATCA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -31.00kcal/mol (69.07 %)

Target gene 5'->3'/996-1016	 CAGCTGGTGGTCGACTGATCA
amiRNA (rev. complement)   	 CAGCTTGTTGGCGACTGATCA
	 ***** ** * **********

top

Target gene 5'->3'/303-323	GAGCTTGATGGCGACTGATCC
amiRNA (rev. complement)	CAGCTTGTTGGCGACTGATCA
	**** **********

Target gene 5'->3'/996-1016	CAGCTGGTGGTCGACTGATCA
amiRNA (rev. complement)	CAGCTTGTTGGCGACTGATCA
	*** * **********