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Searching for TGATCAGTCGCCATGAAGCTC in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT2G43235

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GAGCTTGATGGCGACTGATCC

Hybridization energy: -40.02kcal/mol (88.44 %)

Target gene 5'->3'/303-323	 GAGCTTGATGGCGACTGATCC
amiRNA (rev. complement)   	 GAGCTTCATGGCGACTGATCA
	 ****** *************

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AT2G43235.1 | Symbols:  | sugar porter | chr2:17975775-17977912 REVERSE
Target region: GAGCTTCATAGCTTCTGATCA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -29.91kcal/mol (66.10 %)

Target gene 5'->3'/592-612	 GAGCTTCATAGCTTCTGATCA
amiRNA (rev. complement)   	 GAGCTTCATGGCGACTGATCA
	 ********* **  *******

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Target gene 5'->3'/303-323	GAGCTTGATGGCGACTGATCC
amiRNA (rev. complement)	GAGCTTCATGGCGACTGATCA
	**** ***********

Target gene 5'->3'/592-612	GAGCTTCATAGCTTCTGATCA
amiRNA (rev. complement)	GAGCTTCATGGCGACTGATCA
	******* *******