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Searching for TGTTAGGAACGATGCGACCCG in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT5G53400

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: CGGGTCCCATCGTTCCTAACA

Hybridization energy: -40.15kcal/mol (85.74 %)

Target gene 5'->3'/359-379	 CGGGTCCCATCGTTCCTAACA
amiRNA (rev. complement)   	 CGGGTCGCATCGTTCCTAACA
	 ****** **************

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AT5G53400.1 | Symbols:  | nuclear movement family protein | chr5:21678671-21680798 FORWARD
Target region: CTGGTCCCATTGTTCCTAACA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -33.37kcal/mol (71.26 %)

Target gene 5'->3'/535-555	 CTGGTCCCATTGTTCCTAACA
amiRNA (rev. complement)   	 CGGGTCGCATCGTTCCTAACA
	 * **** *** **********

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Target gene 5'->3'/359-379	CGGGTCCCATCGTTCCTAACA
amiRNA (rev. complement)	CGGGTCGCATCGTTCCTAACA
	**** ************

Target gene 5'->3'/535-555	CTGGTCCCATTGTTCCTAACA
amiRNA (rev. complement)	CGGGTCGCATCGTTCCTAACA
	* ** * **********