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Searching for TGTTAGGAACGATGGGCCCTG in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT1G16800
AT5G53400



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: CGGGTCCCATCGTTCCTAACA

Hybridization energy: -41.89kcal/mol (88.58 %)

Target gene 5'->3'/359-379 CGGGTCCCATCGTTCCTAACA
amiRNA (rev. complement) CAGGGCCCATCGTTCCTAACA
* ** ****************
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AT1G16800.1 | Symbols:  | tRNA-splicing endonuclease positive effector-related | chr1:5745516-5755256 REVERSE
Target region: CAGGGCCCATTGTTCCCAAAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -36.62kcal/mol (77.44 %)

Target gene 5'->3'/2483-2503 CAGGGCCCATTGTTCCCAAAA
amiRNA (rev. complement) CAGGGCCCATCGTTCCTAACA
********** ***** ** *
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AT5G53400.1 | Symbols:  | nuclear movement family protein | chr5:21678671-21680798 FORWARD
Target region: CTGGTCCCATTGTTCCTAACA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -36.06kcal/mol (76.25 %)

Target gene 5'->3'/535-555 CTGGTCCCATTGTTCCTAACA
amiRNA (rev. complement) CAGGGCCCATCGTTCCTAACA
* ** ***** **********
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