Target Search

Search:	Example: ath-miR156a
Genome:	Help
Mismatches:	Help

microRNA Filter

Advanced Search Options

Results

Searching for TTCGACGATTAGGACTTCCCC in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT5G12310

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GGGCAAGACCTAATCGTCGAT

Hybridization energy: -33.80kcal/mol (76.42 %)

Target gene 5'->3'/523-543	 GGGCAAGACCTAATCGTCGAT
amiRNA (rev. complement)   	 GGGGAAGTCCTAATCGTCGAA
	 *** *** ************

top

AT5G12310.1 | Symbols:  | zinc finger (C3HC4-type RING finger) family protein | chr5:3980227-3982443 REVERSE
Target region: GGGGAAGTCGTAATCGTTAAA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -33.17kcal/mol (74.99 %)

Target gene 5'->3'/44-64	 GGGGAAGTCGTAATCGTTAAA
amiRNA (rev. complement)   	 GGGGAAGTCCTAATCGTCGAA
	 ********* *******  **

top

Target gene 5'->3'/523-543	GGGCAAGACCTAATCGTCGAT
amiRNA (rev. complement)	GGGGAAGTCCTAATCGTCGAA
	* * ************

Target gene 5'->3'/44-64	GGGGAAGTCGTAATCGTTAAA
amiRNA (rev. complement)	GGGGAAGTCCTAATCGTCGAA
	******* ***