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Searching for TTGCGCGAGTTTCACGGTCGA in database TAIR8_cdna_20080412

6 search results.

AT4G27890
AT1G38430
AT1G38260
AT1G38330
AT4G07370
AT2G18760

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: TCGACCCTGAAACTCGCGCAT

Hybridization energy: -40.23kcal/mol (85.92 %)

Target gene 5'->3'/722-742	 TCGACCCTGAAACTCGCGCAT
amiRNA (rev. complement)   	 TCGACCGTGAAACTCGCGCAA
	 ****** *************

AT1G38430.1 | Symbols:  | transposable element gene | chr1:14481343-14484889 REVERSE
Target region: TCGACCGTGATACTCGACCAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -32.75kcal/mol (69.95 %)

Target gene 5'->3'/2863-2883	 TCGACCGTGATACTCGACCAA
amiRNA (rev. complement)   	 TCGACCGTGAAACTCGCGCAA
	 ********** *****  ***

AT1G38260.1 | Symbols:  | transposable element gene | chr1:14378147-14382182 REVERSE
Target region: TCGACCGTGATACTCGACCAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -32.75kcal/mol (69.95 %)

Target gene 5'->3'/3336-3356	 TCGACCGTGATACTCGACCAA
amiRNA (rev. complement)   	 TCGACCGTGAAACTCGCGCAA
	 ********** *****  ***

AT1G38330.1 | Symbols:  | transposable element gene | chr1:14423800-14427835 REVERSE
Target region: TCGACCGTGATACTCGACCAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -32.75kcal/mol (69.95 %)

Target gene 5'->3'/3336-3356	 TCGACCGTGATACTCGACCAA
amiRNA (rev. complement)   	 TCGACCGTGAAACTCGCGCAA
	 ********** *****  ***

AT4G07370.1 | Symbols:  | transposable element gene | chr4:4186038-4188332 FORWARD
Target region: TCGACCGTGATACTCGACCAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -32.75kcal/mol (69.95 %)

Target gene 5'->3'/382-402	 TCGACCGTGATACTCGACCAA
amiRNA (rev. complement)   	 TCGACCGTGAAACTCGCGCAA
	 ********** *****  ***

AT2G18760.1 | Symbols: CHR8 | CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase | chr2:8136236-8140584 FORWARD
Target region: TGGACCGTCAAACTCACGCAA

Possible candidate. Low binding affinity: Only 67.15% of optimal dG

Hybridization energy: -31.44kcal/mol (67.15 %)

Target gene 5'->3'/693-713	 TGGACCGTCAAACTCACGCAA
amiRNA (rev. complement)   	 TCGACCGTGAAACTCGCGCAA
	 * ****** ****** *****

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