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Searching for TTGTTAGGAACGATGCGACCG in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT5G53400
AT2G47040



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GGGTCCCATCGTTCCTAACAA

Hybridization energy: -37.82kcal/mol (85.49 %)

Target gene 5'->3'/360-380 GGGTCCCATCGTTCCTAACAA
amiRNA (rev. complement) CGGTCGCATCGTTCCTAACAA
**** ***************
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AT5G53400.1 | Symbols:  | nuclear movement family protein | chr5:21678671-21680798 FORWARD
Target region: TGGTCCCATTGTTCCTAACAA

Hybridization energy: -35.33kcal/mol (79.86 %)

Target gene 5'->3'/536-556 TGGTCCCATTGTTCCTAACAA
amiRNA (rev. complement) CGGTCGCATCGTTCCTAACAA
**** *** ***********
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AT2G47040.1 | Symbols: VGD1 | VGD1 (VANGUARD1); pectinesterase | chr2:19334966-19337267 REVERSE
Target region: CTGTCGCATCGTTCCCGACAA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -33.09kcal/mol (74.80 %)

Target gene 5'->3'/1580-1600 CTGTCGCATCGTTCCCGACAA
amiRNA (rev. complement) CGGTCGCATCGTTCCTAACAA
* ************* ****
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