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Searching for TTTAGGAACGATGGGAGCCCA in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT4G02500

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: TCGGGTCCCATCGTTCCTAAC

Hybridization energy: -39.15kcal/mol (82.42 %)

Target gene 5'->3'/358-378	 TCGGGTCCCATCGTTCCTAAC
amiRNA (rev. complement)   	 TGGGCTCCCATCGTTCCTAAA
	 * ** ***************

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AT4G02500.1 | Symbols: ATXT2 | ATXT2; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups | chr4:1101507-1103610 FORWARD
Target region: TGGGCTCCCATGGGTCCTAAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -36.20kcal/mol (76.21 %)

Target gene 5'->3'/993-1013	 TGGGCTCCCATGGGTCCTAAA
amiRNA (rev. complement)   	 TGGGCTCCCATCGTTCCTAAA
	 *********** * *******

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Target gene 5'->3'/358-378	TCGGGTCCCATCGTTCCTAAC
amiRNA (rev. complement)	TGGGCTCCCATCGTTCCTAAA
	* *************

Target gene 5'->3'/993-1013	TGGGCTCCCATGGGTCCTAAA
amiRNA (rev. complement)	TGGGCTCCCATCGTTCCTAAA
	*********** * *******