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Searching for TATCGAGGGTCTCACCTGCTC in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT2G27280

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GAGGAGGCGAGACCCTCGATG

Hybridization energy: -38.95kcal/mol (81.26 %)

Target gene 5'->3'/22-42	 GAGGAGGCGAGACCCTCGATG
amiRNA (rev. complement)   	 GAGCAGGTGAGACCCTCGATA
	 *** *** ************

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AT2G27280.1 | Symbols:  | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27285.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79937.1) | chr2:11680904-11682691 REVERSE
Target region: GAGAAGGTTAGACCCTCGACA

Possible candidate. Low binding affinity: Only 65.03% of optimal dG

Hybridization energy: -31.17kcal/mol (65.03 %)

Target gene 5'->3'/211-231	 GAGAAGGTTAGACCCTCGACA
amiRNA (rev. complement)   	 GAGCAGGTGAGACCCTCGATA
	 *** **** ********** *

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Target gene 5'->3'/22-42	GAGGAGGCGAGACCCTCGATG
amiRNA (rev. complement)	GAGCAGGTGAGACCCTCGATA
	* * ************

Target gene 5'->3'/211-231	GAGAAGGTTAGACCCTCGACA
amiRNA (rev. complement)	GAGCAGGTGAGACCCTCGATA
	* ******** *