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Searching for TCAGACCTTGATTTACTGCCG in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT4G29700

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AGGCACTAAATCAAGGTCTGT

Hybridization energy: -35.33kcal/mol (81.22 %)

Target gene 5'->3'/459-479	 AGGCACTAAATCAAGGTCTGT
amiRNA (rev. complement)   	 CGGCAGTAAATCAAGGTCTGA
	  **** **************

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AT4G29700.1 | Symbols:  | type I phosphodiesterase/nucleotide pyrophosphatase family protein | chr4:14543463-14545144 REVERSE
Target region: CCGCAGTAAACCAAGGTCTCA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -29.54kcal/mol (67.91 %)

Target gene 5'->3'/469-489	 CCGCAGTAAACCAAGGTCTCA
amiRNA (rev. complement)   	 CGGCAGTAAATCAAGGTCTGA
	 * ******** ******** *

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Target gene 5'->3'/459-479	AGGCACTAAATCAAGGTCTGT
amiRNA (rev. complement)	CGGCAGTAAATCAAGGTCTGA
	** ************

Target gene 5'->3'/469-489	CCGCAGTAAACCAAGGTCTCA
amiRNA (rev. complement)	CGGCAGTAAATCAAGGTCTGA
	* ****** ****** *