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Searching for TCAGACCTTGATTTACTGCCT in database TAIR8_cdna_20080412

2 search results.

AT4G27890
AT2G12195

Alignments

AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AGGCACTAAATCAAGGTCTGT

Hybridization energy: -34.84kcal/mol (80.97 %)

Target gene 5'->3'/459-479	 AGGCACTAAATCAAGGTCTGT
amiRNA (rev. complement)   	 AGGCAGTAAATCAAGGTCTGA
	 ***** **************

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AT2G12195.1 | Symbols:  | transposable element gene | chr2:4901710-4905819 REVERSE
Target region: AGGCAGAAACTCAAGGTCTCA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -29.01kcal/mol (67.42 %)

Target gene 5'->3'/1974-1994	 AGGCAGAAACTCAAGGTCTCA
amiRNA (rev. complement)   	 AGGCAGTAAATCAAGGTCTGA
	 ****** ** ********* *

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Target gene 5'->3'/459-479	AGGCACTAAATCAAGGTCTGT
amiRNA (rev. complement)	AGGCAGTAAATCAAGGTCTGA
	*** ************

Target gene 5'->3'/1974-1994	AGGCAGAAACTCAAGGTCTCA
amiRNA (rev. complement)	AGGCAGTAAATCAAGGTCTGA
	**** ********* *