Target Search

Results

AT4G29700.1 | Symbols:  | type I phosphodiesterase/nucleotide pyrophosphatase family protein | chr4:14543463-14545144 REVERSE
Target region: CCGCAGTAAACCAAGGTCTCA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -32.07kcal/mol (75.98 %)

Target gene 5'->3'/469-489	
CCGCAGTAAACCAAGGTCTCA
amiRNA (rev. complement)   	
ACGCAGTAAATCAAGGTCTGA
	
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AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: AGGCACTAAATCAAGGTCTGT

Hybridization energy: -31.82kcal/mol (75.38 %)

Target gene 5'->3'/459-479	
AGGCACTAAATCAAGGTCTGT
amiRNA (rev. complement)   	
ACGCAGTAAATCAAGGTCTGA
	
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AT5G32103.1 | Symbols:  | transposable element gene | chr5:11471005-11474915 FORWARD
Target region: ACGCAGAAAATCATGGTTTGA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -30.34kcal/mol (71.88 %)

Target gene 5'->3'/2574-2594	
ACGCAGAAAATCATGGTTTGA
amiRNA (rev. complement)   	
ACGCAGTAAATCAAGGTCTGA
	
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AT3G31422.1 | Symbols:  | transposable element gene | chr3:12795419-12797545 REVERSE
Target region: GCTCAGTAAATCAACGTCTGA

Possible candidate. Low binding affinity: Only 65.65% of optimal dG

Hybridization energy: -27.71kcal/mol (65.65 %)

Target gene 5'->3'/209-229	
GCTCAGTAAATCAACGTCTGA
amiRNA (rev. complement)   	
ACGCAGTAAATCAAGGTCTGA
	
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