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Searching for TCTTGCGGTGAAAAGCGCCAT in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT5G60090
AT2G43420



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: ATGGTGCCTTTCACCGCAAGT

Hybridization energy: -37.40kcal/mol (82.40 %)

Target gene 5'->3'/40-60 ATGGTGCCTTTCACCGCAAGT
amiRNA (rev. complement) ATGGCGCTTTTCACCGCAAGA
**** ** ************
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AT5G60090.1 | Symbols:  | protein kinase family protein | chr5:24213308-24214951 REVERSE
Target region: TTAGTGCTTTTCACCGGAAGG

Hybridization energy: -33.16kcal/mol (73.06 %)

Target gene 5'->3'/889-909 TTAGTGCTTTTCACCGGAAGG
amiRNA (rev. complement) ATGGCGCTTTTCACCGCAAGA
* * *********** ***
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AT2G43420.1 | Symbols:  | 3-beta hydroxysteroid dehydrogenase/isomerase family protein | chr2:18038345-18042175 REVERSE
Target region: ATGGCGATTCTCACCTCAAGA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -27.80kcal/mol (61.25 %)

Target gene 5'->3'/182-202 ATGGCGATTCTCACCTCAAGA
amiRNA (rev. complement) ATGGCGCTTTTCACCGCAAGA
****** ** ***** *****
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