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Searching for TGGAATGTTAATTGTGAGCTC in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT5G53400
AT2G18510



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: GAGGTCACAATTAACATTCCA

Hybridization energy: -33.63kcal/mol (88.34 %)

Target gene 5'->3'/430-450 GAGGTCACAATTAACATTCCA
amiRNA (rev. complement) GAGCTCACAATTAACATTCCA
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AT5G53400.1 | Symbols:  | nuclear movement family protein | chr5:21678671-21680798 FORWARD
Target region: GAGGTTACAGTTAACATTCCA

Hybridization energy: -31.20kcal/mol (81.95 %)

Target gene 5'->3'/606-626 GAGGTTACAGTTAACATTCCA
amiRNA (rev. complement) GAGCTCACAATTAACATTCCA
*** * *** ***********
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AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding | chr2:8038264-8040701 REVERSE
Target region: GAGATCACAATTAATATTCTA

Possible candidate. More than one mismatch at positions 2-12

Hybridization energy: -26.32kcal/mol (69.14 %)

Target gene 5'->3'/1338-1358 GAGATCACAATTAATATTCTA
amiRNA (rev. complement) GAGCTCACAATTAACATTCCA
*** ********** **** *
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