Target Search

Search:
Example: ath-miR156a
Genome:
Help
Mismatches:
Help

Show microRNA Filter

Show Advanced Search Options






Results


Searching for TTTAGGAACGATGGGACCCGA in database TAIR8_cdna_20080412


2 search results.

AT4G27890
AT5G53400



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: TCGGGTCCCATCGTTCCTAAC

Hybridization energy: -45.95kcal/mol (98.97 %)

Target gene 5'->3'/358-378 TCGGGTCCCATCGTTCCTAAC
amiRNA (rev. complement) TCGGGTCCCATCGTTCCTAAA
********************
top

AT5G53400.1 | Symbols:  | nuclear movement family protein | chr5:21678671-21680798 FORWARD
Target region: TCTGGTCCCATTGTTCCTAAC

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -36.47kcal/mol (78.55 %)

Target gene 5'->3'/534-554 TCTGGTCCCATTGTTCCTAAC
amiRNA (rev. complement) TCGGGTCCCATCGTTCCTAAA
** ******** ********
top

WeigelWorld MPI Sixth Framework Program