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Searching for TTTAGGAACGATGGGAGCCGA in database TAIR8_cdna_20080412


3 search results.

AT4G27890
AT1G46624
AT4G02500



Alignments


AT4G27890.1 | Symbols:  | nuclear movement family protein | chr4:13886039-13888282 FORWARD
Target region: TCGGGTCCCATCGTTCCTAAC

Hybridization energy: -41.53kcal/mol (89.41 %)

Target gene 5'->3'/358-378 TCGGGTCCCATCGTTCCTAAC
amiRNA (rev. complement) TCGGCTCCCATCGTTCCTAAA
**** ***************
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AT1G46624.1 | Symbols:  | transposable element gene | chr1:17258200-17263772 FORWARD
Target region: CCGGCTCCCATAATTCCTAAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -36.97kcal/mol (79.59 %)

Target gene 5'->3'/1588-1608 CCGGCTCCCATAATTCCTAAA
amiRNA (rev. complement) TCGGCTCCCATCGTTCCTAAA
********** ********
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AT4G02500.1 | Symbols: ATXT2 | ATXT2; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups | chr4:1101507-1103610 FORWARD
Target region: TGGGCTCCCATGGGTCCTAAA

Possible candidate. Mismatch at position 10 and/or 11

Hybridization energy: -32.71kcal/mol (70.42 %)

Target gene 5'->3'/993-1013 TGGGCTCCCATGGGTCCTAAA
amiRNA (rev. complement) TCGGCTCCCATCGTTCCTAAA
* ********* * *******
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